NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10006245

Scaffold Ga0194047_10006245


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10006245 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6322
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F016247Metagenome248Y
F036080Metagenome / Metatranscriptome170Y
F058718Metagenome134Y
F083731Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000624510F036080AGGAMNPKVDLESAIMLAWQTCEDIDLLFKHHGDHPIPMSDDEVSNALLGIKVLHDMRMEALMDKYCQKMELNQYCTDPEKLAARYEMFGTTKKGSKKK
Ga0194047_1000624513F016247GAGMSHFIIEHRRNGDYIMETIYGVEDIDTSIYQDLLGIWVCDSMEEMLIMEKQLQEMRRGRKRFSQPA
Ga0194047_100062453F058718GAGGMMVECYNSKFEIPDLLIEKFVTDFNVLPGSGYREGVCQLRESIGEVFDIICEDPELLHEKEYLEDFIRALAMKKALETHGIMYDS
Ga0194047_100062454F012096GGAMSTWLIAAMGLVYLIVAVDQFFKGGLGQAIMFFGYAIGNLGLVIVAK
Ga0194047_100062458F083731AGGAGMNLRQLLKQAGVSNDIAAEVERKSKKTSEQMEQEHQEKALAMTKMMINDALRYRKEHGAKEEPPFQKKIIIPGD
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