Scaffold Ga0194047_10117265

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194047_10117265

Scaffold Ga0194047_10117265

Overview

Basic Information
Taxon OID	3300021354 Open in IMG/M
Scaffold ID	Ga0194047_10117265 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1115
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.701	Long. (^o)	-93.727	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024744	Metagenome	204	Y
F053994	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_101172651	F053994	GGAG	LQHISNLLEEMDTTSLQAWLAKMGRSTPSTHTHERNSMATNNAHKEMPGSGVMYWEDEEMRKSPKGPDFKGFIVLECDYKAGEKLKIAAWQKPTSRGNSLLALKEDNWSKKKREEERQDKEVTPSYARKPSRSQDDDVPF
Ga0194047_101172653	F024744	GAGG	MTDMQPPPKQIQMSQDSINKANNSINYSVNLINMSLQQLWNIAYQAGFEDAQEIMKTDRGVQQ

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