NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206690_10637817

Scaffold Ga0206690_10637817


Overview

Basic Information
Taxon OID3300021355 Open in IMG/M
Scaffold IDGa0206690_10637817 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1004
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012639Metagenome / Metatranscriptome279Y
F015413Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0206690_106378172F015413GGAMESTDLEKQVETLLSTPQFEQPQFDQSISSTVKDIFSKSMLVSSAGTALSVQLGNVVGKYIPMGIAPTGAGAIVAGVLLSKFGGSNRMLKDLGLGVIQGGIAQAMTPFVSGLIPAQFSQEVKTEKAEELNPMVKGVMW
Ga0206690_106378173F012639AGGAGMSSNNSGIVLTCQAVYAANAPVATVISATMQTSPTVAAVTELQVPLTENWIATDMYILAAAGGGAPTVINPVISLDKNRGRQLVQSPPLSSMLITNNTRPRFSPQPIGFEGGSIIRSFATSTVVNGGAVSTATFYVA
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