NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10000095

Scaffold Ga0213858_10000095


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10000095 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37554
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (17.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002332Metagenome / Metatranscriptome569Y
F074771Metagenome119Y
F076942Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1000009510F002332N/AMAVVNQVQKKVKISKWQIVKYQILTHCYLNNIILSNSDLDCLTLLALNQPIELSNFCSDASAEEDSIFKSPQSVRNSLNKSEKHKLIIKDSSNKKLILLNPSLKVQVDGNVLLDYKFFANESKKS
Ga0213858_1000009525F074771N/AMKFILRGNKVLLDKPEKKEEEGKLDLILTDEMEKQQEQDMMKEWTRLNVHAVGVEVSDLKAEDKVYVRTQALHNAEIIDLDGKIKMMVNIHDVIMIWK
Ga0213858_1000009544F076942N/AMNSKVTVLADEKTGAVVNQSENNPEYGFVRVQQQRTMIDDNGFLRRKSISALVPGTIAELNDAGFYAGQQIDGKIVVEESLEPFNTKTPERDLKIAGETGVVCTLGGLPIYRRTLLSFDATTADALIKHDNVEELRAAYDAQKSKSALKPNADFENING
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