NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10000331

Scaffold Ga0213858_10000331


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10000331 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22984
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (75.68%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F004956Metagenome / Metatranscriptome417Y
F007417Metagenome351Y
F008281Metagenome336Y
F008595Metagenome / Metatranscriptome331Y
F012117Metagenome / Metatranscriptome283N
F018155Metagenome / Metatranscriptome236Y
F034894Metagenome173N
F067646Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1000033114F008595AGGAGMSKEDNKMENQEPVIITFNGKEYRAADLNEDQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINATNEEAEVVEEE
Ga0213858_1000033121F007417AGAAGGMSATRYTLQVQLPSIGWVVAIKTSDLFYMASKRARLIAQGHKVKLTKEKK
Ga0213858_1000033123F008281GGAGMNLMCNTKHGVIQWRWKDSGQPSPEYKSLNHQWWIPKKTEFELVTKVDPTIKQEIKDEIWEDMQSDFEYQKGIYKLHKLNKRESK
Ga0213858_1000033126F034894AGGAMNVTFNLMGGGELNIPSRAISGFYKDEFTSEVIVEVNGDEYKVRDSLDEVRYILGLAR
Ga0213858_100003313F001582GAGMPLESALDFNAYVDTTTGHGVTATFFEVQQTLWDDLPLIDTLFDIDSGASKNIDIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQEDKLRVDAITTDQGNVLKAETTFIIRTVEPDNTGLISLVLEEE
Ga0213858_1000033132F018155AGGAGMGQHKAKVEQRRKELEAEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTEFND
Ga0213858_1000033133F067646AGGAMIEWILYFIAGIFGLVFIGIILSVLAFIYVIRELD
Ga0213858_1000033136F012117AGGAGMDILGGMSSSSGESQQVYLAFKTMQQKFFANGETPVEFQYLQLDPATFKSGWGRYTKAEGFEYHWDDKFGVVSSKPADDFKRAFSAWVFPQGAQHAYLWQRFTYAETSAFNSLLATFWNQMDTSSDSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF
Ga0213858_100003316F004956AGGAGMKMISPDGKVSIEAHPSKVESLLNKGWKEEAVHSQDKIKSSSKKKSKDEVENGNT
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