NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10001012

Scaffold Ga0213858_10001012


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10001012 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13196
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034404Metagenome175N
F040054Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1000101213F040054AGGLKTIPIISMPLPNGGAVVCRVDAIKAATTNLNNDSLTDIYVEVACPEGITIDVDIDTFTTSWLSALLLPVNDWGLETHEMH
Ga0213858_1000101222F034404GGGGGMLQTVTIEWHPVQRGTMPREEGSYLVAFDDGAVETYPMSINDITLGEIRDGYTHGLYWADCIPSPAL

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