NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10002211

Scaffold Ga0213858_10002211


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10002211 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9285
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016661Metagenome245Y
F065668Metagenome127N
F078585Metagenome116N
F079927Metagenome115N
F095309Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_100022112F016661AGGMNYSAERYLALKQFEREQKRDRIRAVLWNVSITSIYAMVVIQVMRGFIL
Ga0213858_100022113F095309GAGGMTYSEYRKKLRMLSAKYNESYKKYGWGADTTRKLRQQKIDLRAKYAVHSFDYAVETLTSKGVL
Ga0213858_100022114F065668AGGGGGMLYTIWVGGVEVNSHLVSREEAYRIASNWRNEGYEDVIVERYKPYA
Ga0213858_100022116F079927GGAGGMSKDYREQSQLEDEADEKYLTMYQYYKQLTDYERGEYDALHSYPFDESEESNKDYTEGYRTGYEYAQQMGANSNE
Ga0213858_100022117F078585AGGAMNTHNKWEQIAMSRYEDDSSYDYSDYCEGKGYYESYVEKPFDEDEQALKRFKEREEAKLYPPIGKQEMQERIKEVKTRLGAKYYD
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