NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10021463

Scaffold Ga0213858_10021463


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10021463 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3083
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017135Metagenome242N
F020172Metagenome / Metatranscriptome225N
F064767Metagenome / Metatranscriptome128N
F093736Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_100214631F093736AGGAVAKDSKTAAHRNRAIRQEALREQLSQQGHEQYISEIISNLSDPEMEYDSLWVQRLKAAADLRLKLMAKYIPDLKSQELTGPEG
Ga0213858_1002146310F017135GAGGMIPIISCPLPGGGQALIKTQDIGGATTGKNPKECDVYVLGWAANGITIDLSLDDFAEIWVSALFDEGSNDIEIVFTPDELH
Ga0213858_100214633F064767AGGVSDVDEYIIAVRAADSMAKTWKSDVAILSNLKIVRLENARGPILEIVRWDL
Ga0213858_100214635F020172N/AMFCTRNGYKHIENLDKVCVLIGRLKGLTESEYLDLCAINKLENARALEMAKHYPSH
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