NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10043832

Scaffold Ga0213858_10043832


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10043832 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2160
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042350Metagenome / Metatranscriptome158Y
F076122Metagenome / Metatranscriptome118Y
F090460Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0213858_100438322F076122GAGLLANVSGSMYSKGMAKHEVVNEIIDYLDTRRSELSNEMMNHFTGSKQWDELDAMYEVYDHLIAKLEDDYR
Ga0213858_100438324F042350GGAGMPGRENDYDRGYLRGVSAMMSLITSDKVKYLDKTNVLQYARQLVEQQKEDNDK
Ga0213858_100438327F090460AGGAGMINDKMDDKEYWEGIRDACEYFVTLGVEDAMNCDIAVMAQKELELV

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