NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213872_10037648

Scaffold Ga0213872_10037648


Overview

Basic Information
Taxon OID3300021361 Open in IMG/M
Scaffold IDGa0213872_10037648 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2209
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000966Metagenome / Metatranscriptome819Y
F001044Metagenome / Metatranscriptome794Y
F002177Metagenome / Metatranscriptome587Y

Sequences

Protein IDFamilyRBSSequence
Ga0213872_100376481F000966AGCAGGMPSRKFVWDPGRWRIRAEEARTVADQMTHEEARTIMRRIANDYDRLAKVAEEQLADQDKRATGD
Ga0213872_100376482F001044N/AMMQIDQNLCAALYLLGFNFLGGDLFSGEIAEIKGDMTIKLVHPPGEELKFVVELPGEKQMTFSVDRHQIVNLAERWQ
Ga0213872_100376483F002177GGAMQTEQLATQPPTRGRQIKFTPERIQQVRNLVERGKSREEIAELIGVTVGSLQVTCSRLGISLRRVVFSNGMGLLRRGGPHSDNGPSTYTASRRGGFSLPPINGRPQQNSQSDPVEQPQATTPHEERARTDEMGLANLALRMKYRGHERIRELPLTQDMIRQLAFEAQFRNMSIGEFVGELLIAMMKRDDLFQHVLEPNSKQP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.