Scaffold Ga0193699_10000956

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193699_10000956

Scaffold Ga0193699_10000956

Overview

Basic Information
Taxon OID	3300021363 Open in IMG/M
Scaffold ID	Ga0193699_10000956 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11665
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9134	Long. (^o)	-106.8956	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049311	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193699_1000095613	F049311	GGAG	MSKRSSMSVIRKSRLGHSAMMWALLILLMPVAIHIVSAQVAPAPRPTPLLGTWEAVNRSAGGLGSTISFAPDNTLSYTLGAMVDMQYKRSRDSLYIIDPQNGINAFRVSINRDTLVMTNEGREQRETRVGAPVTGADPVVGRWTYQHYTGVPAFEEYTPGGEFRLRVPIRTLQGTYAVLGDSAMLHLPGPGGGDRAVRFTIVGDTLQLNWSGQTARYVKAAPLGTGHR

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