NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193699_10015915

Scaffold Ga0193699_10015915


Overview

Basic Information
Taxon OID3300021363 Open in IMG/M
Scaffold IDGa0193699_10015915 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2714
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9134Long. (o)-106.8956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037998Metagenome167Y
F055264Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0193699_100159152F055264N/AMSSRTGLEAEAINRLTDGVQPPVMRAILVQCLAGDIAPSAAISRMLAEGPLSTVRAAIDDVTERAASISRASDMLVHDRVDELTQVFVENVAELADVSDATKISSEARAAREASSARSRDSGNRGEPRIS
Ga0193699_100159153F037998N/AMAVIYGRRPRQLIVVWGFSMLLILGIWWLETQAPALHELVLPFYWIIIAVAFYLTWRWLRARSKKDRRGMDRRHTERRDENEAPDSNAPGPNS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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