NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10000012

Scaffold Ga0213859_10000012


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10000012 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77103
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040851Metagenome / Metatranscriptome161N
F042915Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0213859_1000001234F040851GAGVNNVKCIRLDTGEVIIGFVKKLWNGNYEIRDAQRLVEEIKDGRMEVNFGPFIPYAKEYNFVINKGLIQTVFEAKPQLETNFKVATGNNRVRGK
Ga0213859_100000127F042915AGTAGGMKSFKQYQLDEKLDEKLENLNEARIANYKPTKFEGKEFNKNKEIKALKTMHSAIIKIAKMQDNMQYTAETGGTAQRGNPHAIHQSLRDAEQAIFNYIGGIERGYYDGVIDMERD
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