NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10022671

Scaffold Ga0213859_10022671


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10022671 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2928
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030088Metagenome186Y
F033798Metagenome176Y
F049552Metagenome / Metatranscriptome146Y
F074752Metagenome119Y
F082690Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0213859_100226712F033798N/AMVLDRMMHNEPMRWQGLLMDMETNYISLEAFRKWLAAEWYEKELLKDEFPEFHFLDDDMLVMEMQHELLATLN
Ga0213859_100226713F030088GGAMGFKLNIVTKTKMSAKEMSRTLITLNQSEVFNYYGKLYVPFSAMSVVFNSKGATKRFDKDLDVLVHPTRGRLFQVPKEVEQFVTVV
Ga0213859_100226714F049552N/AMKNKNKEFWNVIAAMDFNGRGHEFAGRWLMEDSGLTFSEIKQIRNTATRKVNVLYDKFINDPNLKIGSDDGFSDVLWQTVANGYQSFHNCTAESLTEMYDEMRYTESFAYAFHIVNEIEDEQFAANQFLKRERAMKHIEEMRKYGGGFDQKLIAAFEHADNNNKRKLAKGFPEIFEHLVD
Ga0213859_100226717F074752N/AMVLVEQETTSISFDQEGDAYFMIGDVVYYLNEFMKVTDGEFDGVTHVTNTGGIGIKIDEVNEEVEYSFFTN
Ga0213859_100226718F082690AGCAGMSKECVMCGGDAGEYGNNPAPLYHEGVCCDECNIEVVSFRIMISQIQ
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