NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10039984

Scaffold Ga0213859_10039984


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10039984 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2225
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0213859_100399841F002858AGGAGMAIDEKSIYLVDGGDYQVYCLGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDKGNVVMPRVTLDRILFIASDELPQAESEL
Ga0213859_100399842F001655GGAGMKQPDNSHTKHFGNDETIHNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFENFEASVRRTAKALAESYTYWPEGYVHVQTIINQEYVNII
Ga0213859_100399843F073499AGGAGMMTEQQLEQWLRDNPWKANVIYPAGGIGFMMFLMYFFIQVIDSFLTGSWI
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