NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10073341

Scaffold Ga0213859_10073341


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10073341 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1626
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005195Metagenome409Y

Sequences

Protein IDFamilyRBSSequence
Ga0213859_100733412F005195N/AKLNPINRLKPIELGVNKSAQEAFDVAAKNARNTVRDLQVKYKDNDALKYELDQLQYYLKADEGVPSRSALRDLNESLKNFTNSGLVPVDEKKALNKVIGEINNKVGPMQATKTRYGGETNYTLQGGKDYRETIFTLPEDIPTNASLRSKGGHFGDEIGDVNNIYHIRYDTRFTPDGKKVFMINEIQSDVNQSIAKSLTKAQQLSGEQRLNPFNADIELNLLVSQRGKMLRDLDDAVARNEFGRVNAISSSMKDINTKLKRISSQRDYNSNQKDYFPMVEADSYGDHAIKYLMQKAARENVDYVAVAPFDKVSFRQGYKAGNERFYGYANGKGIGKKGKAVIPDVMARNARFYGSKAGPTKISLSDPTKPYKSVSSDTFKYPTDHPLKGKEIKSTYHNSAGMNPEKGTKNIPEGDPRLYFDAYAIKVNPLMRNTQKTYKSKGGLVVDIFKPIRYN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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