NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206123_10026479

Scaffold Ga0206123_10026479


Overview

Basic Information
Taxon OID3300021365 Open in IMG/M
Scaffold IDGa0206123_10026479 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3324
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027482Metagenome194N
F039583Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0206123_100264795F039583AGGAGMSNEKRTHQNQANRMAARKKFLDALQEEQREALQKSFDAMQNCVWMLNECNDLYVSDVSKLESAFHRLQSIFFDIEPSEWQLERFAEHGVEWPPAPRGRPAKSD
Ga0206123_100264798F027482AGGMNKKGLEKWLDRMFAEGKAVTYPCGHFVGREWCRSFDEKLASCSTLAELEGFANRRRFDPSLPRWTAAERAEILKRKIKLEKGKRK

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