NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10001969

Scaffold Ga0213860_10001969


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10001969 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8360
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004866Metagenome420Y
F005243Metagenome / Metatranscriptome407Y
F006666Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_100019694F006666N/AVKPKSHKEFKKGIADEVGVHQSVVDDFLSFYYAKVRSKLSSLDFPRVYLEGLGTFYLRKNKLEKAIKKNKSILGNLAKRTYAGFAKSEDVQKDIEQMEQALHQMEQDILNKKNFKNER
Ga0213860_100019695F004866GAGMALVNKVDLKLQVDLDVSIKYQIVTYCFFNETLISNSDLKFLSELGKAGKIELTKFCTDLVKQNIFKSSQSARNAITKAEKKGLLTKQGVNKKTITLNKAINVQTDGLVLLDYKVLGRETQES
Ga0213860_100019697F005243N/AMAKETNVNPLSEKDPQMSKEEMAKRREEITEFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFLAQSYAQQNAQNGVDPNSEEGKAFQEAMANAMKGGSEES

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