NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10003277

Scaffold Ga0213860_10003277


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10003277 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6637
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004640Metagenome429Y
F015084Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_100032775F004640N/AMATVYLPVTARLNLTSEQRAKGISRELYNLKFPKHLHEPGRVSTMLLACIEHPSTGEWACVGDTELSIAVHPQRDVTALVSLFPQLTHEERSAMTYYIATSDVVLFSYLMPSDSEILTQEEAEAAGWFGDSI
Ga0213860_100032777F015084AGAAGGMADKMKVKGLEELTKQIGRIGKFPKEMARELRRSNREVGRMASKKIKPQIPRSGKDFKVYKGTPGGKRAPKGQGKVIKTIPSGTLRRSIGVRNSRGSRINVFVGPRKGGALRMDGYFAQWTEDGGIGGRKKTVNSPTYNKIAPALARLRPAMERLMIMKYRKVFDNYKL
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