NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10021048

Scaffold Ga0213860_10021048


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10021048 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2708
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F056585Metagenome137N
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_1002104811F073499AGGAGGMDEQQLEQWLRDNPWKANVIYPAGGIGFMMFVMYTCIQIIDSFLTGSFI
Ga0213860_100210482F008883GAGGMNFGRYTIWYNHEDHVWDIYDGNKGYKYPEYTINNYSGLMNKLRDRFGFLDTDRNHRRFWRVMRWWDKLRHGRR
Ga0213860_100210485F056585AGGAGMTRETWEMWADEYQEYYDDDTPVYPDDLEEWKKEEQKVIDEVIQALQEVRA
Ga0213860_100210487F024320AGGAGGVTFEEYEQGYYSGDSEDPSGPPEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLETLMVELHGREWRDAL
Ga0213860_100210488F023856GGAGGMRCKACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMEYYQYEIFTEDEKYDTLY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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