NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10252244

Scaffold Ga0213860_10252244


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10252244 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011949Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_102522442F011949AGGAGMAFIVDSGVTISFADYDDVLQKDQRLFEQNEGLTDDVVEDGLIRATERILSRMRSTSWWRSYYTKLSGTGYTSVADIPALDPDKIKARLNDFRDLCIYIGLSDYILPIVADFGAEDNAERQKISFYANKGEQLFGELITAGDWYDFDGDSSIASSEKEPGQYNLKRVR
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