NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10000357

Scaffold Ga0213863_10000357


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10000357 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35448
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (70.37%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009045Metagenome / Metatranscriptome324N
F019728Metagenome228Y
F030153Metagenome / Metatranscriptome186Y
F033765Metagenome176N
F040864Metagenome / Metatranscriptome161Y
F066152Metagenome / Metatranscriptome127N
F079945Metagenome115N
F081762Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000035710F040864N/AMEDPTKKLYDHKGWFWDHINKRMYRWHELELLMKERTLKEKKNADQLKNQRSDV
Ga0213863_1000035717F066152AGGAMLFPSIPQYLCVYEIDSNLHMVVLQARNSDTAELFALLRSMEESSDYTFGKILDVSEIDPSHHISLTIH
Ga0213863_1000035730F079945AGGMVEYQGKKVTVRTKVKHELSDVVIAWVNQVVKNPEDVIVDWNQMTAKEQEEFERQAFLLEGKLHKVIGVQFAEIISSNSYTKKI
Ga0213863_1000035737F019728N/AMITKEELEKNDWTVVPKGVWFGVDFAESHKVNVLNILTDLLDLDTDAEGYNFVVCAYKKQETEDER
Ga0213863_1000035741F033765GGAGGMKSLLRTILDECEKNKLMYRANAYDLWNNGCEDMIVPWGYDFEALTETMKAFELDERIGNIQILPESKVKTHAELIDSIRSDLLEYSFEDEERSLIENLTDEQIISEQPDEYYSGYYWIMWTNYGGNEHLDCFTDYTTSLDKYFDVSELTNDWEDQYNEFKLGLI
Ga0213863_1000035745F009045AGGMNNLNDTFEASRIYRGNRHIIKDQIIQGDDYVVDGVRRSFWSNPDKSHSCHLFKMVRGEIIDRITVDSFEGETLNEFIQRTETILLGGK
Ga0213863_1000035746F030153AGGGGGMSLIVDFTKIDEVAKKELNQYQEMIGYYMMAIGMGEITEKNHLEVYARLVLLQASTLDSSKPWITLRMVKGLINARFNIAFESKAKFSTRMMKATLREVERLEAKESKEVA
Ga0213863_1000035749F081762GGTGGMREQLLDTLNLSIRNTPLTGGGISENPYIALSLIDRGLADTRAYAIGRALENRDLSKLASAICECDSSNFPRLVRLEPRLFELLLSDESVKGYWGVLSERLEEVMK
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