NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10001382

Scaffold Ga0213863_10001382


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10001382 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17622
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027482Metagenome194N
F039583Metagenome163N
F064617Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000138216F064617AGAAGMADKFLDFIDMIDGGGAGTMGDKFEGGNIFSMLANALATPYGSEDEERMRRVRQMRGLLAPDESIAPKAAPRPTVTRGGGAGRTQVRPQTRPAQSMPFGSTPVGGGMPAAPSMTFGNIPVGGGMPAAAQNMVRPEMPASGMPQAARAALQGPILESGMPIAMTDDDAFRIMVSQLGQTAVDRMSGQQFVQTLNQIKSQGRGM
Ga0213863_1000138226F039583AGGAGMSIEKQNFQYQANRMAARKKFLDALQEDQRDALQKSFDAIQNCVWMLNECNDLYVSDVAKLQSAYHDLQNIFFDVTPDSWQLERFAEHDVKWPPTPRGRPAKSD
Ga0213863_1000138229F027482AGGMDKKGLGKWLDRMFAENKAVTYPCGHFSGREWCRSFDEKLASCSTLAELEGFANRRRFDPSLPRWTAAERAEILKRKIKLEKGKRK
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