NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10010753

Scaffold Ga0213863_10010753


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10010753 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5667
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012872Metagenome / Metatranscriptome276Y
F013704Metagenome / Metatranscriptome269Y
F016957Metagenome / Metatranscriptome243N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_100107533F012872N/AMNLHFEGNRLYYMEKEAELHRALDYLSKELSEREAMTKEQLWDVFHICADTSAVYRHITDYFTTLDKLILDARITNDKLKQELYDLKKENTRLNKALENYMDEF
Ga0213863_100107534F013704N/AMNFKRRILNGQRFVVSGMEFVCIETHAYLQTRVDGEESDIDVGSSYYIVRNTSTGKLHRIPFARIIEKDDAGEITYKR
Ga0213863_100107538F016957GAGMQLRNYLKDKRKLTESRTAICVEVGKTGEALFKEITGAHKSSLADDKQHIDFYWEEKKVDVKGLKKMHLTGYILLEFMNVWGGDGWCSKKSKAEYIAFQFPDAFYVFRKKHLRVRALDMCEVYSPEAVTRQNYIPYEKGLYKWLGRWNAQDVFTYLKFSDVEDLIFEVLPYKIQE
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