NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213877_10110462

Scaffold Ga0213877_10110462


Overview

Basic Information
Taxon OID3300021372 Open in IMG/M
Scaffold IDGa0213877_10110462 Open in IMG/M
Source Dataset NameVellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)843
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.28Long. (o)-43.5919Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001575Metagenome / Metatranscriptome669Y
F033566Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0213877_101104622F033566GAGGMSVDNPPAPYQIETQLALIRRDIEEIHLALHGDSKGRKGLVDQVEDLVTVADRGRFSLRVALWLGGGVVAAATALAQFKQAILGLFHQ
Ga0213877_101104623F001575GGAMKLESWHSAEEKRRWKIVRTDTYTDVAGEIITADEATGECCIQVGGETKTLSFGPHGIRIVGRRR

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