NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10001602

Scaffold Ga0213865_10001602


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10001602 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14656
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F006845Metagenome / Metatranscriptome363Y
F007417Metagenome351Y
F012117Metagenome / Metatranscriptome283N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000160214F012117AGGAGMDILGGMSSSSGESQQVYLAFKTMQQKFFANGETPLDFQYLQLDPATFKSGWGRYTKAEGFEYHWDDKFGVVSSKPADDFKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSILGSFWNQMDASSDSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVNQNELTDDDIPF
Ga0213865_1000160215F006845GAGMDLNSYLLEQDFEEYCRFAFERIQSACEFLGIINDEDYESFKERCYTQLEADYLNSIEKTIH
Ga0213865_1000160224F007417GGAGMQTRYTLQVQLPSLGWVVAMKTNDLFDVASKRARLIAQGHKVKLTKEKKQ
Ga0213865_1000160226F001942N/AVPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFIFAAENSRSQSETYKHYTCDILAFVFFDDDKKHIMFKANTSSQNYFTFDNKSITDDMELESLKETLDSLSSVPVLNPII
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