NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10005174

Scaffold Ga0213865_10005174


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10005174 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7743
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012117Metagenome / Metatranscriptome283N
F019728Metagenome228Y
F024204Metagenome207N
F094536Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100051741F019728AGGAGMITKEELKKNGWTVVPNGVWFGVDYAESHKVNVLDVLTDLLDLDTDVEGYNFVVCAYKKEGGNDE
Ga0213865_1000517415F012117GGAGMDILGGMSSSNEGQQVYLAFKTMQQQFFANGETPVEFQYLQLDPATFKSGWGRYTKAEGFEYHWDDKFGVVSPKPADDYKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNNILGSFWNQMDSSSANLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRSAEFVIPSWYTDEEKPVEDTFKSPNDGLADKVQEMVEKNELSDDDIPF
Ga0213865_100051744F024204AGGMMSNYSYQEIVEEGIEVCASCGSANINFNQNKQDKSKPIEHCFDCDYSEGIATCMPNDLHFYQEAKETFNKLQEVDNV
Ga0213865_100051748F094536AGGMRITVKDNLKDVRKQLDKDLNKRDFNKIMARAMNYTGERVVNAERSHLNDKLDNPRPQTVQSVVISNFAKPKSNRLATRVIVKDWAVKFLHYIYTGENEPARRQKYASPTKDGEYKKGKYGNIMKLSAKGGLLGRVDKTKDSQRKGSRFQGIPKGEGSKTYGIWERQGRKGREGLKLLVAFTPFIKHRKFIDFYKVGEKVIKSTLHREINRQFARHLKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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