NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10014646

Scaffold Ga0213865_10014646


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10014646 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4474
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008882Metagenome / Metatranscriptome326N
F013295Metagenome272N
F038638Metagenome / Metatranscriptome165Y
F076030Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1001464612F004343GAGGMTQHREMIEEARRLLNSERENIPSMSKDFGKDYWLLTYPCGKIVKTYEDKRKKDVVVQESYQ
Ga0213865_1001464614F038638GGGGGMSYEIAEYKYINHMKETYGLRGDIEYPSRTRSHQDENGNWVLVSPQGLKMAKIFKNGDII
Ga0213865_100146462F076030N/AMSEKLPKKGTPGRKKIHFTEEQLLEAERLAGLGFSEESLCKAVFGCSVSTLQRRKKEFNNIDQYIRRGKIKSITEVSSALFDSATGRNGRDPSVSAQIFFLKNKGKEAGNPWADVQQVENNINLSDIISSANARIIEHQADALPTSAREEIDIKQINKAKNS
Ga0213865_100146466F008882AGGGGGMSVARYNFNKPKINRQELELLNWFLAHTDDNPLINPEALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEL
Ga0213865_100146469F013295AGGAGMKINNLTPKQFARREIIKYLRDLFDNPQKHIQGFDDLTHRQQEEILRFVSLDEHRIDKLLNLPMGEE
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