NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10033492

Scaffold Ga0213865_10033492


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10033492 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2878
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F015342Metagenome / Metatranscriptome255Y
F025285Metagenome / Metatranscriptome202Y
F039045Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100334922F015342N/AMSVAANMPARNVKGNVQAQDKILYVANKLGLSSLKYMQATTRVIYDQSTTAATQHTLFEGAAARSFPLTNLGANGNTFQVDEALLVEKIAFFVPDADDGQNFASSLNSYKFDLIIGNKTVMKDVVVEYAGQQAFYNDGTAGSQVIDLEGVGILIPPQVEFKINVKPFVTNTRGAASARVGCYLFGTGVLLNFNTSI
Ga0213865_100334923F025285N/AMSQVGKLNMVNAKLGATMPGQQTTRYIYDSVVAAAGQVNFNFFQTFAGKTDLQSNLTTNKLDSSESMVIKSIYVATNVTQGLTGHSNLNITVGNQVVLKDFNLAFNATNRGVSFDRLHSGIVTTDYVEVRLLTDIVIPPQVNFKATLELAEGGTLAAESITLGLKGYGTIFSAGSTF
Ga0213865_100334924F000710N/AMPMNDISYRQGLRTKGFQTTVPTTGADQTLSLSGLAKQFEGILCTSTTSAAPGTIIDPAQLRLTLIINNDVVIDDDVAYHYAVSATGGFSGGFPFFIPFPRRLTGQDTILLKVTNSSGASQILNTTVYYRNEI
Ga0213865_100334925F039045N/AMSIAIPTLIEKDIRCGKARYQTYQTGMGGQSVLVVPDNSYITIFGYDYSPAGGGITLGDDTGGNAPKLMPALLRPFETQQISFYTGQAFHPFIHHVDLRRSGEDSVTATTDRFEMSIQPIERSTYIISNRSVAITVGLIQRVELNAAAAIPVTDKTPPNLTYGGSAATPNVESIYSSNLANPPSQVQPSLKQFQDYGLGGVPGNAQDQAFALPDGIDGLIEPSQYLEDNFDITFREAAACNYFLNIHYALYTNATPEQLG
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