NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10038853

Scaffold Ga0213865_10038853


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10038853 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2658
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014373Metagenome / Metatranscriptome263N
F016661Metagenome245Y
F065668Metagenome127N
F078585Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1003885311F014373AGGAMSRCKACDVILTEAELRKRDRVTDEHLDLCAVCHSASDEAIEENWATAEEREIIRSNN
Ga0213865_100388535F016661AGGGGGMNYTAERYLALKQFEREQKRDKIRALLWNVSIGSIYAMAVIQVFTGVIS
Ga0213865_100388536F065668AGGMMYTIWVGSVEVTPHLTNREEAYRIASNWRNDGYTDVIVERYKPYEYHS
Ga0213865_100388539F078585AGGAGMSRYEDDSSYDYSDYCEGKGYYESYVEKPFDEDEASLRRIEAREEAERLAKLYPPIGKQEMQERIKEVKTRLGAKYND
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