NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10042760

Scaffold Ga0213865_10042760


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10042760 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2524
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080492Metagenome115N
F091841Metagenome107Y
F092098Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100427604F091841GGAGMNNTQEYKIIDWAYNRMFSDKTFKTFDDGIEFLYERFNEDELQDIFVVPSNTKCKANGYWSTMN
Ga0213865_100427605F080492GGAGMSKLHHTKYKENYKNYILECIEDEDDITGKKFSDDEKINYLFNRFYSEYDFHIERQGKHSAMTDWLSGLSINIPYMYDEIIQLAIDMGSIDENPSEALESIVIKDYFSFMANVILSFEPKEVA
Ga0213865_100427606F092098AGGTGGMRITIDIETLNSAFWNHCEDSENSTFDYSEVERILKNILPRIEISDFGKVNDINGNTVGKFTVERNKEEY
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