NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10062422

Scaffold Ga0213865_10062422


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10062422 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2043
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010198Metagenome / Metatranscriptome307Y
F016661Metagenome245Y
F079927Metagenome115N
F095309Metagenome105N
F097118Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100624222F010198AGGMKIANKDGFRFGESAYLIGHEFGLICVSYGYDEQCALDNAVDAGYMDSERMEDADYKEYDANGWHDSFICLGNASEPFWSEYLWIKPANERKKEVA
Ga0213865_100624223F097118AGGTGGMITFPSGLKFDNGESSLVDSLFTGDSTNDGWYTVTGRKNKTMRFFTGNGKPLFYIVSNKHGITSGNLTTSGDKFYYMAGTCSLTSKKLGLDKLDYSTEKTLITDIIEAV
Ga0213865_100624225F016661GAGGMNYTAERYLALKQFEREQKRDKMRALLWNVSIGSIYAMVVIQVFTGVIS
Ga0213865_100624226F095309AGGVNYSEYKNKLRKLSAKYNESYKRYGWGADTTRKLRQQKTDLRAKYALHSFDYAVESLTSKGVL
Ga0213865_100624229F079927GAGGMSKDYREQSQLEDEADEKYLTMYQYYKQLTDFERGEYDALHSYPFDESEESNKDYTEGFRQGYEYAQQMGANSNE
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Institute for Fundamental Biomedical Research
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