NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10194031

Scaffold Ga0213865_10194031


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10194031 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1009
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F007531Metagenome / Metatranscriptome349Y
F044513Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_101940312F000302AGGAGMIETMTQATKDRIAEMERQKIELENQLELLGYSGNLVRMHQIEEEIYEIEDTIRKLLP
Ga0213865_101940313F007531AGGAGMLDKIEKQILEFAKDTGLTERREIVHGTLYVKLHEEKECDTFHRAIRTFYKNQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEMMDPTDIDEGVWSEFAEEELMNNVPEDVDTMLDLMNDAEEGR
Ga0213865_101940314F044513AGGAGGMTRNSWILKQIYTDAKNNLGWVFKVVLMAGGFIAGIKLLMFFSVPKEIVFPVLWTAFILVAIYHW
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