NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213881_10007627

Scaffold Ga0213881_10007627


Overview

Basic Information
Taxon OID3300021374 Open in IMG/M
Scaffold IDGa0213881_10007627 Open in IMG/M
Source Dataset NameBarbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4437
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.28Long. (o)-43.5919Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006575Metagenome / Metatranscriptome370Y
F007126Metagenome / Metatranscriptome357Y

Sequences

Protein IDFamilyRBSSequence
Ga0213881_100076271F007126AGGAGMAGVINDIEALAEFRAHLMQFNHELAENFATIQAHWRELGEVWRDDMYRLFGEALEEVSPGIALYLSATEG
Ga0213881_100076272F006575GGAGMSEQQETVIVTSPYLSLRQAVRPAILAHSLLADNQERAGKLAAECEDLLFLTRELLKAAGRARILVPEPRAAIPEASEDDHGDRPARFLDAYADAGLLWAKVVGSSLALAGALIDRGEWDDVRRLADFLADAGEQSAAAGLRVQLGKAIWDTRREQLQDIGNTMPPAAIGAAINALRAVLREVPEDFPDRNREVNRLLAPLAASILAVMKDQGIDMPYHSRVEHIATGGVAKYPDIVMISLDELAAEFEGICR
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