NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213869_10000674

Scaffold Ga0213869_10000674


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000674 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26909
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020253Metagenome / Metatranscriptome225Y
F025151Metagenome / Metatranscriptome203Y
F056058Metagenome / Metatranscriptome138N
F060786Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000067415F020253N/AMGKRAVPHVKTPKRGQRATKKNLSHSTFVSKRHPNSKRVTSGALK
Ga0213869_1000067425F025151GGAGVGELIRRNPKRTQERLLRLRRIVGPEKNPKRRFASDFDNEDYLKWTAISSDKIDYEIKPIVKGAGRLGELVDWCDDNCNGIYVIGKSDKIYFEDENDAAMFALVWK
Ga0213869_1000067437F060786AGGMIKYVKSQKTGEWLPISPEDMDYKRYGKTLEELIVERDAINKIVYGTERFKIR
Ga0213869_1000067445F056058N/AVLGNADLEKEVMSFKYLTYATLITAVIIFAFVKSVEAQPHQVIDTDPEMLVLATELEDKEMAVMVLGGVDYYAQECTSLTSRGVIYRNKIITYHEINEALLPINPTYIKGALAVSGYDCYEMYELITLLEKDVVEEPETPVDKEETIA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.