NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10001287

Scaffold Ga0213869_10001287


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10001287 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19008
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.13%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025968Metagenome / Metatranscriptome199Y
F028498Metagenome / Metatranscriptome191N
F033811Metagenome / Metatranscriptome176N
F054452Metagenome / Metatranscriptome140N
F066285Metagenome / Metatranscriptome127N
F079390Metagenome / Metatranscriptome116N
F103078Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000128714F033811GGAGMKLFCNIAVMETNIAQAFIEAIDYSHVKHIIRSNKSIKAHWGGVTPSIADLKRVIKNMWARVSKHESAEDCVNGIVMIKDGDRVRVDFLYLSYSSQTEESSQHSEEECLQDSEREIKSS
Ga0213869_1000128715F066285N/AMDKKSWNVVYFNRPDVHKNLVWSDGKRYFDGFLGSDNSVYRKTSGTPVEEPNAVYWTEKPFNASDDQE
Ga0213869_1000128717F054452N/AMTDELKMSLLNELMFGLDVWNHEHHEEIMFLHDFGLVKVYDEDLQFTATTEEGVLELKRLIKLYFVFLN
Ga0213869_100012872F028498N/AMADEGGIFTDESRYDVGTMLTVLNAARAFAITEMYRKNTRVHPNFIQRVYPEYKENLQQDDCYTLFEIPRTVEINDKMDGLMYVGSIKGDEAFWKVRTRMQLSSRRNHRIHKLAQKKHIHFLYDTTRGYLEIYDPKVKYPLVEGIFEDPTSVPQFSFDHDEYPITNDAMKRIEDLVRRGTIVDSMRMPINKISNSQEDSNIKRDVQTK
Ga0213869_1000128720F079390N/AMDKPKNFKELKKRLLPFINYEQEVQLSKEAKVQNVGNMINSHVKILEANPGNAGYMPYYDRLVMLLTILESGWE
Ga0213869_1000128728F025968N/AMIAPQEHVERVLERCFEVYPPKGRKHRKFFKNLVKEGSMPESMASMITKIIEDPNCVYIVKADGTLKILD
Ga0213869_100012875F103078N/AMEREIAVIKPKGVNHIKQAVTLTATYSLKGRNISLNQYGEVKPGNLTTSRGDIRFAGELATESKIFGDSVEEVEDQIDFWMNHPMVEDVNGKGKDNSRFTIEVIAATKDKKRAKTVSVNRVVSTIYGMSEAERKDVMYFFKQDPRDMNDDDITLELVDIEGGLLLREPNTSRFIETFGSLNKSSVAKKVEMLVYVNKGIVSGFVTEDADKFYIGDVLIGKDEDDIALFFKDNPQMYDNLVRSLADGGDDTAFNELNEAEDDDITPAEKRAHFTKLYKKYKLKGKFPADLDKAIERIHAYEEENGIELSE
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