NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10001321

Scaffold Ga0213869_10001321


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10001321 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18739
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (93.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002965Metagenome / Metatranscriptome517Y
F031710Metagenome / Metatranscriptome182Y
F062783Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000132123F062783AGGAMGKVKDMMMDVEDFVYDFYTPEGEMTESPKVIIEKAIEKFGWSFGSYASEVIEEAQGEMGASWDWEKSVSQNLVGFEISDEVPY
Ga0213869_100013213F002965AGGAMIKNLNIPETCGWLGMILIHGATAPTSISVLMGWSTNLPPLNFILLVWFGLFLFLVRAIYAKDTLYIVSNAIGFALNSLLLTLIAFN
Ga0213869_100013218F031710GGAGMTPFEQAFLATSCLAVFFYFGKHLGKKEKVEDIVEHTFDMLEKNNMIKVKKDKKTGEKEIIPLDKLI
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