Basic Information | |
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Taxon OID | 3300021375 Open in IMG/M |
Scaffold ID | Ga0213869_10005765 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7823 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007723 | Metagenome / Metatranscriptome | 346 | Y |
F021182 | Metagenome / Metatranscriptome | 220 | Y |
F031507 | Metagenome / Metatranscriptome | 182 | Y |
F034716 | Metagenome / Metatranscriptome | 174 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213869_1000576511 | F034716 | N/A | MKDIYIPKVANQLDSCLNKTKVVREMVTGERPADSKTAGSYLQQIEIQLEEIKEFIERG |
Ga0213869_1000576517 | F007723 | N/A | MIKSIKSKLLTYLFKDWVNNETDLETLQVSKQFIKKREIEITGHVPVMGFRSHTTQ |
Ga0213869_1000576518 | F021182 | N/A | MANVKYPEGYIPKIQYWTSKLNDELNNTKVPSIRIIDSIHRKLDFFIQKEWNRTVTSK |
Ga0213869_1000576519 | F031507 | N/A | MNVKINSKVSFENKYGQIQEGIVTDNNYQCEFDADLNGCVRVSVDYGSSIMGSINTLIDKSQIINL |
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