NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10007592

Scaffold Ga0213869_10007592


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10007592 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6715
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051550Metagenome144N
F068835Metagenome124N
F105332Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000759218F051550GGAGGMDKYDNTFEERNKKNKYDMADEAMQKYFKKEGLVEKKDWLKLGTEPKDTPDMKMMWLALQILLMPDYIFVMKDKLYVAEVKGTLKFKESDFNKLTEMYNKAEKYDNVRVGVTYFAHPDADPVWLSYTKIKTQWNYDKIPMQYYPELDFEGNKKAYKVLLNN
Ga0213869_100075925F105332AGGAGMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK
Ga0213869_100075928F068835AGGAGGMANLFKGDINSYELLDFLSDRLQDELNRINTEKSRGISSWSDERYARYDEQRYVIKQHHKYLQSLYKELEKAEMFEDVAREGTW
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