NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10011482

Scaffold Ga0213869_10011482


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10011482 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5267
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032042Metagenome181N
F033958Metagenome176N
F040865Metagenome / Metatranscriptome161N
F090875Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100114821F040865N/AGPVFSGSFKSIYPMAEKIVRHLGTSFSVGSSYAVSSDGVCTANIEGCTWTDIRDVIRDMESQEESYNESANAEPAF
Ga0213869_1001148212F032042AGGAGMNKLYFSIGDSVMSRWGEAKIVRMDITSFGEPKYGDSVFNVPIDYNGPWIADLDNGHWAYGSQISLIQGHNEYA
Ga0213869_1001148214F090875N/AMNREELELCGDRLDSVRDLLELLPNEIGSWKYAYWYKVYQYLDEKLEAAEKDE
Ga0213869_100114828F033958AGGALDGEILRMETLSRKLEFGKHGQIVFRFGDNWSLSVINRGYGASEGLFEIAPMVGGDIEFVEGVSSEFDNVRGYLTEEQVFEYVDKMEKITDHAAVLSDSNLPYW
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