NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10017505

Scaffold Ga0213869_10017505


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10017505 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4107
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010571Metagenome302Y
F015812Metagenome / Metatranscriptome252Y
F020816Metagenome / Metatranscriptome222N
F038195Metagenome166Y
F100938Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1001750510F038195AGGAGMKLHKDYYEYKTIPFTYFKKVANRHDFKKEWVSVRCQEDIMKQQPHNVEIRRLKKNV
Ga0213869_100175053F015812GAGMNKTLYKRLEDICAREYVVNKLSEHKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRIEEHMSYMVSSYLNKSYEGISVD
Ga0213869_100175055F100938GGAGGMSDWLDGTKPKYIECVYETAIEFDLEELDIDYDTIDDYHVRYGTLQVTFKDGTIKSYEGNQMETDYKWARYENVLDESWNKVEGLN
Ga0213869_100175056F020816AGGAGGMKVYEITVSTTVQIDSEDDYCTSVEHAEDIMWDRWGVYKDDLKITNVEIWEEDDE
Ga0213869_100175057F003976AGGAGGMSRTYNDYYFEKQDILDTLDKLEMSVRFLNVWVNEPMGLENAKYVLEKNANQEFKWFSRNMVKELVEEETYESI
Ga0213869_100175059F010571AGGAGGMSNIITETYADKLYEELYEKHYKEVGKTTDDVEYIEREAERLALIDLDNFEMEG
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