NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213869_10021452

Scaffold Ga0213869_10021452


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10021452 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3645
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007417Metagenome351Y
F008281Metagenome336Y
F013088Metagenome / Metatranscriptome274Y
F018155Metagenome / Metatranscriptome236Y
F036651Metagenome / Metatranscriptome169N
F067646Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1002145211F013088GGAGMDDKTKKALWIPEELHKDIKVFAITNNMNIESATQLLLKLGMVSYKENNHESK
Ga0213869_1002145212F018155AGGAGMSQNKAAVDKRREELEAERLDKSIKMYYFQKGAGEHYREIQYESGRVVRTDFND
Ga0213869_1002145213F067646AGGAMIEWILYFIAGIFGLVAIGGIISVIAAIYILNELD
Ga0213869_100214524F007417AGGTGGMSATRYTLQVQLPSIGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKESKQ
Ga0213869_100214525F008281AGGAGMNLMCNTKHGAIQWRWKNSGQPSPEYKSLNHQWWIPKKSEFELVTKVDPSIKQEIKDEIWEDMQSDFEYQKGIYKLHKLNKKGE
Ga0213869_100214527F036651AGGAMREITLNEVGQKRPLILSVRQIRGYYRDVFTGETKVQTENREYVVRDSLYEIGYLMGVNQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.