NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10026903

Scaffold Ga0213869_10026903


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10026903 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3181
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059009Metagenome134Y
F074736Metagenome119N
F086825Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100269034F086825AGGAMYIKESYVYTLPADMDDPEGPTRWVGCSAGDCGYERCEDDSSYMIRMKPVLLRMFKVDGRQVCEGCLKEWRAEISEWIE
Ga0213869_100269036F059009GGTGGMKDDELPDCYVQANDDYYVCYVIEYDDEEHMDIDERYHNGILEVMRTCRICGECDVYYPV
Ga0213869_100269039F074736AGGTGGMSRTVMLDTVMRGGSFTYTASGTTWSSNGPWSYIDSNVLYSQDEIDIGGMTTTQEETFYPEAATVQNSPFYTVPGVVPRDPGDPSAGYVPYGALFEYVLITESPFNVAKWVGDQTYTGDATSWIPVYSCPGINPRRTTDQATTLGFDNILYGRVQMIVHNSSLPQQAGVVYSTNEFGSMTPTASDRLYVTRFIVVQPLGGQTIPNGSGIQIPHMRVVLVGSGKEENDLSYVMRLRNSYLLQQDVN
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