NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10048750

Scaffold Ga0213869_10048750


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10048750 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2214
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014373Metagenome / Metatranscriptome263N
F016661Metagenome245Y
F078585Metagenome116N
F095309Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1004875011F014373AGGAMSRCKACDVILTEAELRKRDRVTDEHLDLCAVCHSASDEAIEENWATLEERAI
Ga0213869_100487503F016661GGAGMNYNAERYLALKRYELEVKRNKIRALLWNVSIGSIYTMAVIQVFTGVIS
Ga0213869_100487504F095309GGAMKYSEYRKKLRKLSAKYNESYKRYGWGADTTRKLRQQKMDLRAKYALHSFDYAVETLTSKGVL
Ga0213869_100487509F078585AGGAGMSRYEDDSSYDYSDYCEGKGYYESYTEKPFDEDEASLRRIEAREEAERLTKLYPPIGKQEMQERIKEVKTRLGEKYND
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