NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10070807

Scaffold Ga0213869_10070807


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10070807 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047678Metagenome / Metatranscriptome149N
F085360Metagenome111N
F100687Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100708072F085360GGAMAKIKKKLKPFKNCDYKAQSYCFNKGFVITLEPTGAKYKVKYQLGHKAQYYMKGKEFDLQEGYQSIWDLYTKIYNYDKSNTNTL
Ga0213869_100708076F100687N/AMDTKLKNIIKTIQPEFESEDSWYNEQLPNEVSLYLDTDKHLIDLHLKDDVLNTNIWIEDEEYKVTDEGANFIYKHLNKLLDNEIELTKRYYNEEKYKQNRY
Ga0213869_100708077F047678N/AMQLTEKQIEQVSGAIITSFVNLHFLEEAKASGLFRHRTKNNVKKTIDDLIEIETNYYQKVEEVDEKDLGDKLVANKLEFVKWLLNEFDFNDFTKIQEVCIAYSKDKEQLIKTSNKILTRHGAEIIE
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