NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10074345

Scaffold Ga0213869_10074345


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10074345 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041784Metagenome / Metatranscriptome159Y
F044516Metagenome / Metatranscriptome154Y
F067740Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100743452F067740GAGGMKVKEMIEMLELADKDSKVVLEVRDKDTDLIGYFEVGSDWTEYGGYDPDELNYFKSLNEPKSKAMVELTLNNDMWKTIGIDND
Ga0213869_100743453F044516GAGMCRDTGYYEPRDDVTNKVVEEMFEKQNKSLMAYYLKMAYQDDQHTYMNDLYWVLQNKFDDVDLEAVESHVEELLLIDDSDRELFEEDE
Ga0213869_100743454F041784AGGAGMYTKTIGYCGVDSGQLFITDPCYIKHQEQGNGQWNMEWIDGDDGKRTYKTLPDPTLDGETKNFYSKVCEANGNHNEAGVEVELGVAFGTTHGDGNYAVQGIFDDDDVMVGIFMDLDGRVKGEFNYETEDEWA
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