NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194130_10119438

Scaffold Ga0194130_10119438


Overview

Basic Information
Taxon OID3300021376 Open in IMG/M
Scaffold IDGa0194130_10119438 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1679
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8369Long. (o)29.6087Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F031384Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0194130_101194381F031384AGGAMPNWVYNGLTIEGNPDLVNDLVRIMNRPFVMIHDNWNMETREMEVTQTTYPNPVFAFHNIWNHRQEGITDLEYVKQPQ
Ga0194130_101194382F000450AGGAMGNRANFVFVDGAGDAIVLYGHWAGHQMLGKLADAVIAARPRWNDESYATRIAISNLIGDQWNMETGWGLQINSISDNEHKIAVINWKERTFSLHAEDDHRNLDNKVLGMKNEAIFTMDLSAFCEKYALEQLLAI
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