NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10001609

Scaffold Ga0213861_10001609


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10001609 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19813
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (19.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008239Metagenome / Metatranscriptome336Y
F010650Metagenome / Metatranscriptome301Y
F104911Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0213861_1000160920F104911GAGMKTPINFQDYLEFRKNQVAHDMYRVLYNDLSAIGKDEINDEVATEFIKIFNLLYNE
Ga0213861_1000160938F010650N/AMSKMQQFLRIANARLRKVYKNKQQRKAWAANMWRRYIDRQNIEKDL
Ga0213861_1000160940F008239AGGMTNREILLEMYEKLWDADKDKWAWNVILKDTLEKLETKDDTER

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