NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10017205

Scaffold Ga0213861_10017205


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10017205 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5158
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019312Metagenome / Metatranscriptome230N
F061808Metagenome131N
F063568Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0213861_1001720512F019312N/AMTHTQAIYKAQIVFEEALSDKETIDQLLHIDAQMYANTGKDTSKAEMESVKRASAFIYRLIKGIDYDKGQRFIQAMGLTR
Ga0213861_1001720514F063568N/ASKLLLVWLWTQGHKVKEYKEAEGITTVHDKDEYKFDVSGNYGGFRVEYTHNRFSFYDGDKKLKDTDLNEFR
Ga0213861_100172059F061808N/AMNKFRVFVKDKFDVVFDTMEKARECRRALDQLKYEGIEIIITQEDIDPR
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Institute for Fundamental Biomedical Research
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