NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213861_10067801

Scaffold Ga0213861_10067801


Overview

Basic Information
Taxon OID3300021378 Open in IMG/M
Scaffold IDGa0213861_10067801 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2225
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030251Metagenome186N
F046022Metagenome152N
F092744Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0213861_100678015F030251GGGGGMLSTDSFPPVKMVTFPALQREISLVKRTPFIGTPLWLIFERDGEPEPQEIARFRDFYLALECFDSLVEEAKNES
Ga0213861_100678016F046022GAGGMKVNRQILTARALQNIQIKTAPQRAVDPVEKTTKIRSWKEIFDAQLKGESDA
Ga0213861_100678017F092744AGGAGGMATIKTLKTFTPKNHPTISVELSKLTNRKGENLYLVSFLDAMHNQEITLGRYRSITSANEGFDLHKKAAQWGELYA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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